Package: plantecophys 1.4-6
plantecophys: Modelling and Analysis of Leaf Gas Exchange Data
Coupled leaf gas exchange model, A-Ci curve simulation and fitting, Ball-Berry stomatal conductance models, leaf energy balance using Penman-Monteith, Cowan-Farquhar optimization, humidity unit conversions. See Duursma (2015) <doi:10.1371/journal.pone.0143346>.
Authors:
plantecophys_1.4-6.tar.gz
plantecophys_1.4-6.zip(r-4.7)plantecophys_1.4-6.zip(r-4.6)plantecophys_1.4-6.zip(r-4.5)
plantecophys_1.4-6.tgz(r-4.6-any)plantecophys_1.4-6.tgz(r-4.5-any)
plantecophys_1.4-6.tar.gz(r-4.7-any)plantecophys_1.4-6.tar.gz(r-4.6-any)
plantecophys_1.4-6.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
plantecophys/json (API)
| # Install 'plantecophys' in R: |
| install.packages('plantecophys', repos = c('https://remkoduursma.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://bitbucket.org/remkoduursma/plantecophys
- acidata1 - An example A-Ci curve
- manyacidat - An example dataset with multiple A-Ci curves
Last updated from:6c063da430. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 126 | ||
| source / vignettes | OK | 178 | ||
| linux-release-x86_64 | OK | 168 | ||
| macos-release-arm64 | OK | 117 | ||
| macos-oldrel-arm64 | OK | 120 | ||
| windows-devel | OK | 106 | ||
| windows-release | OK | 99 | ||
| windows-oldrel | OK | 96 | ||
| wasm-release | OK | 98 |
Exports:AciAciC4DewtoVPDesatFARAOFARAO2findCiTransitionFindTleaffitacifitacisfitBBfitBBsPhotosynPhotosynEBPhotosynTuzetRHairToLeafRHleafToAirRHtoVPDVPDairToLeafVPDleafToAirVPDtoDewVPDtoRH
Dependencies:
Introduction to fitaci
Rendered fromIntroduction_to_fitaci.Rmdusingknitr::rmarkdownon May 28 2026.Last update: 2017-12-06
Started: 2017-08-02
Fitting A-Ci curves - FAQ
Rendered fromfitaci-FAQ.Rmdusingknitr::rmarkdownon May 28 2026.Last update: 2021-03-31
Started: 2016-10-20
New temperature responses of Vcmax and Jmax
Rendered fromnew_T_responses.Rmdusingknitr::rmarkdownon May 28 2026.Last update: 2019-03-12
Started: 2018-02-01
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Modelling and Analysis of Leaf Gas Exchange Data | plantecophys-package plantecophys |
| C4 Photosynthesis | AciC4 |
| An example A-Ci curve | acidata1 |
| FARquhar And Opti | FARAO FARAO2 |
| Calculate transition points for fitted A-Ci curves | findCiTransition |
| Fit the Farquhar-Berry-von Caemmerer model of leaf photosynthesis | fitaci plot.acifit |
| Fit multiple A-Ci curves at once | fitacis plot.acifits |
| Fit Ball-Berry type models of stomatal conductance | fitBB |
| Fit Ball-Berry type models of stomatal conductance to many groups at once | fitBBs |
| An example dataset with multiple A-Ci curves | manyacidat |
| Coupled leaf gas exchange model | Aci Photosyn |
| Coupled leaf gas exchange model with energy balance | FindTleaf PhotosynEB |
| Coupled leaf gas exchange model with Tuzet stomatal conductance | PhotosynTuzet |
| Conversions between relative humidity, vapour pressure deficit and dewpoint | DewtoVPD esat RHairToLeaf RHleafToAir RHtoVPD VPDairToLeaf VPDleafToAir VPDtoDew VPDtoRH |
