Package: plantecophys 1.4-6
plantecophys: Modelling and Analysis of Leaf Gas Exchange Data
Coupled leaf gas exchange model, A-Ci curve simulation and fitting, Ball-Berry stomatal conductance models, leaf energy balance using Penman-Monteith, Cowan-Farquhar optimization, humidity unit conversions. See Duursma (2015) <doi:10.1371/journal.pone.0143346>.
Authors:
plantecophys_1.4-6.tar.gz
plantecophys_1.4-6.zip(r-4.5)plantecophys_1.4-6.zip(r-4.4)plantecophys_1.4-6.zip(r-4.3)
plantecophys_1.4-6.tgz(r-4.4-any)plantecophys_1.4-6.tgz(r-4.3-any)
plantecophys_1.4-6.tar.gz(r-4.5-noble)plantecophys_1.4-6.tar.gz(r-4.4-noble)
plantecophys_1.4-6.tgz(r-4.4-emscripten)plantecophys_1.4-6.tgz(r-4.3-emscripten)
plantecophys.pdf |plantecophys.html✨
plantecophys/json (API)
# Install 'plantecophys' in R: |
install.packages('plantecophys', repos = c('https://remkoduursma.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://bitbucket.org/remkoduursma/plantecophys
- acidata1 - An example A-Ci curve
- manyacidat - An example dataset with multiple A-Ci curves
Last updated 4 years agofrom:c974982804. Checks:OK: 7. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Oct 14 2024 |
R-4.5-win | OK | Oct 14 2024 |
R-4.5-linux | OK | Oct 14 2024 |
R-4.4-win | OK | Oct 14 2024 |
R-4.4-mac | OK | Oct 14 2024 |
R-4.3-win | OK | Oct 14 2024 |
R-4.3-mac | OK | Oct 14 2024 |
Exports:AciAciC4DewtoVPDesatFARAOFARAO2findCiTransitionFindTleaffitacifitacisfitBBfitBBsPhotosynPhotosynEBPhotosynTuzetRHairToLeafRHleafToAirRHtoVPDVPDairToLeafVPDleafToAirVPDtoDewVPDtoRH
Dependencies:
Introduction to fitaci
Rendered fromIntroduction_to_fitaci.Rmd
usingknitr::rmarkdown
on Oct 14 2024.Last update: 2017-12-06
Started: 2017-08-02
Fitting A-Ci curves - FAQ
Rendered fromfitaci-FAQ.Rmd
usingknitr::rmarkdown
on Oct 14 2024.Last update: 2021-03-31
Started: 2016-10-20
New temperature responses of Vcmax and Jmax
Rendered fromnew_T_responses.Rmd
usingknitr::rmarkdown
on Oct 14 2024.Last update: 2019-03-12
Started: 2018-02-01
Readme and manuals
Help Manual
Help page | Topics |
---|---|
Modelling and Analysis of Leaf Gas Exchange Data | plantecophys-package plantecophys |
C4 Photosynthesis | AciC4 |
An example A-Ci curve | acidata1 |
FARquhar And Opti | FARAO FARAO2 |
Calculate transition points for fitted A-Ci curves | findCiTransition |
Fit the Farquhar-Berry-von Caemmerer model of leaf photosynthesis | fitaci plot.acifit |
Fit multiple A-Ci curves at once | fitacis plot.acifits |
Fit Ball-Berry type models of stomatal conductance | fitBB |
Fit Ball-Berry type models of stomatal conductance to many groups at once | fitBBs |
An example dataset with multiple A-Ci curves | manyacidat |
Coupled leaf gas exchange model | Aci Photosyn |
Coupled leaf gas exchange model with energy balance | FindTleaf PhotosynEB |
Coupled leaf gas exchange model with Tuzet stomatal conductance | PhotosynTuzet |
Conversions between relative humidity, vapour pressure deficit and dewpoint | DewtoVPD esat RHairToLeaf RHleafToAir RHtoVPD VPDairToLeaf VPDleafToAir VPDtoDew VPDtoRH |