Package: plantecophys 1.4-6

plantecophys: Modelling and Analysis of Leaf Gas Exchange Data

Coupled leaf gas exchange model, A-Ci curve simulation and fitting, Ball-Berry stomatal conductance models, leaf energy balance using Penman-Monteith, Cowan-Farquhar optimization, humidity unit conversions. See Duursma (2015) <doi:10.1371/journal.pone.0143346>.

Authors:Remko Duursma [aut, cre]

plantecophys_1.4-6.tar.gz
plantecophys_1.4-6.zip(r-4.7)plantecophys_1.4-6.zip(r-4.6)plantecophys_1.4-6.zip(r-4.5)
plantecophys_1.4-6.tgz(r-4.6-any)plantecophys_1.4-6.tgz(r-4.5-any)
plantecophys_1.4-6.tar.gz(r-4.7-any)plantecophys_1.4-6.tar.gz(r-4.6-any)
plantecophys_1.4-6.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
plantecophys/json (API)

# Install 'plantecophys' in R:
install.packages('plantecophys', repos = c('https://remkoduursma.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://bitbucket.org/remkoduursma/plantecophys

Datasets:

On CRAN:

Conda:

6.80 score 210 scripts 481 downloads 12 mentions 22 exports 0 dependencies

Last updated from:6c063da430. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK126
source / vignettesOK178
linux-release-x86_64OK168
macos-release-arm64OK117
macos-oldrel-arm64OK120
windows-develOK106
windows-releaseOK99
windows-oldrelOK96
wasm-releaseOK98

Exports:AciAciC4DewtoVPDesatFARAOFARAO2findCiTransitionFindTleaffitacifitacisfitBBfitBBsPhotosynPhotosynEBPhotosynTuzetRHairToLeafRHleafToAirRHtoVPDVPDairToLeafVPDleafToAirVPDtoDewVPDtoRH

Dependencies:

Fitting A-Ci curves - FAQ
1. Some of my curves don't fit, what should I do? | 2. The fitaci function gives different results from other implementations, which one should I use? | 3. How do I report when using the fitaci function? | 4. Which fitting method should I use? | 5. How do I account for the mesophyll conductance?
Rendered fromfitaci-FAQ.Rmdusingknitr::rmarkdown

Last update: 2021-03-31
Started: 2016-10-20

New temperature responses of Vcmax and Jmax
Source of data | Data analysis | Results
Rendered fromnew_T_responses.Rmdusingknitr::rmarkdown

Last update: 2019-03-12
Started: 2018-02-01

Introduction to fitaci
Preparing the data | Fitting A-Ci curves | Temperature corrections | Using measured dark respiration | Using different columns | Missing leaf temperature and/or PAR | Using mesophyll conductance | Fitting TPU limitation
Rendered fromIntroduction_to_fitaci.Rmdusingknitr::rmarkdown

Last update: 2017-12-06
Started: 2017-08-02